Commensal Bacteria
The GI Effects Profile takes a detailed look at your commensal bacteria – When in balance commensal bacteria all live happily together and some play important roles in health and or digestion. Using algorithms and data collected over the past years the lab are able to report on various observations about your commensal bacteria – such as abundance, immune v inflammatory susceptibility, diversity and balance.
Commensal bacteria form a part of what makes up your microbiome which is is made up of trillions of microorganisms along with commensals your microbiome is made up of good, bad and imbalanced bacteria, yeasts and for some also parasites. Your microbiome plays an important role in human health. The gut microbiota is diverse, varies among individuals, and can change over time, especially during developmental and life stages and with disease. The microbiome is viewed as an integral part of the body. Research has demonstrated the bacteria in the gut interact with the immune system and play an important part in immunity.
Some of the jobs gut bacteria do are;
- Producing short-chain fatty acids (SCFAs)
- Helping digestion
- influencing the immune system
- Modulating GI hormone production
- Maintaining gut barrier function and motility – associated with leaky gut.
- Modulating oxidative responses
- Producing vitamins (e.g. biotin, vitamin K)
- Metabolising xenobiotics and phytochemicals – removing toxins
- Preventing colonisation by potential pathogens
The GI Effects tests your microbiome – good and bad bacteria, yeasts and parasites via;
- PCR Testing
The most up to date way of testing bacteria is to use a process called PCR – it means that the lab is looking at the DNA of bacteria which is more up to date than trying to culture bacteria – grow them in a petri dish. This is especially important as many bacteria are anaerobic – meaning they do not live in oxygen and therefore die soon after they have left the body. This makes culturing many bacteria impossible. - Culture
The process of culturing means that the lab checks for the presence of good, bad and imbalanced bacteria and yeasts by trying to grow them in a petri dish. If they manage to grow any bacteria or yeasts such as candida, they then treat them with pharmaceutical and natural antimicrobial agents to see which are sensitive – meaning which are reduced or killed off by the agent.
Bacteria and Mycology Sensitivity
In the ever expanding world of microbial resistance, the sensitivity panel is a valuable tool to help inform which antimicrobial drugs or plant based antimicrobials may be most effective in addressing any imbalances and /or pathogens. - Microscopy
Highly skilled lab technicians check for eggs and parasites and yeast with a microscope.
Please see the comparison table here (coming any day now) to see exactly which good and bad bacteria, yeasts and parasites are checked for on the GI effects. Or check out the sample report at the bottom of the page.
Digestion and Absorption
This part of the test gives information about how well you are digesting and absorbing your food. Ultimately indicating how well your GI tract is performing its basic digestive functions. It includes the following markers.
Pancreatic Elastase-1
A check to see how well the pancreas is playing its part in the digestion of protein fat and carbohydrate. Pancreatic elastase is secreted exclusively by the pancreas and provides insight into the production of the digestive enzymes amylase, lipase and trypsin.
Products of Protein Breakdown (Total)
A check to see how well you are digesting protein. Dietary protein that is not digested in the small intestine may be fermented by colonic bacteria resulting in undigested proteins which then move on to the colon. An imbalanced microbiome, termed dysbiosis, can result in unbalanced levels of these metabolites.
Fecal Fats
A check to see how well you are digesting and absorbing fats – this can impact on absorption of the essential fats and fat soluble vitamins Vitamin A, D, E and K. Indigestion after eating fatty meals and pale, floating stools can be signs of suboptimal fat digestion or absorption.
Gut Inflammation and Immunology
This part of the test is checking for immune function in the gut and gut inflammation.
Calprotectin
Calprotectin is a simple measure that checks for inflammation in the gut. Calprotectin can be useful for distinguishing between Irritable Bowel Syndrome (IBS) and Inflammatory Bowel Disease (IBD). Levels can vary with age and children under 10 have higher levels.
Eosinophil Protein X (EPX)
Another marker for inflammation along with calprotectin. EPX checks for eosinophil (white blood cell) – driven inflammation and may also be raised in response to allergies ( more common in children). Elevated levels may also be from food sensitivities related to IgG reactions. Parasites and infections can also cause raised levels.
Fecal Secretory IgA
SigA is secreted by the mucosal tissue of the GI tract. Mucosal tissue are strategically located in areas where external pathogens enter the body and it helps to form the protective lining/barrier of the digestive tract to protect us against pathogens and bad bugs and toxins
Metabolic Markers
This part of the test is looking at markers that are impacted on by bacteria and also play an important part in the health of the gut wall and the way we use energy.
Short Chain Fatty Acids (SCFA)
These are produced by the fermentation of dietary fibre and resistant starch by the gut bacteria and play an important role in the health of the gastrointestinal tract as well as protecting against intestinal dysbiosis – imbalances in gut bacteria. SCFA’s maintain barrier function, provide fuel for the colon cells (colonocytes), regulate absorption of water and electrolytes, use up unabsorbed carbohydrates, support beneficial bacteria and balance anti-inflammatory and antimicrobial activity. They also play a role in decreasing inflammation, stimulate healing, and contribute to normal cell metabolism and differentiation.
Beta-glucuronidase
One of the ways that toxins are removed from the body is via the stool – the toxins are bound to a molecule that allows them to be removed. Beta-glucuronidase can uncouple these toxins resulting in them being recirculated. Betaglucoronidase can also break down carbohydrates and helps absorption of some plant polyphenols and or nutrients.
Additional Results also on the GI effects
Faecal Occult Blood
The term “occult” in this context simply means blood not evident to the naked eye, that is, blood present in microscopic quantities only. Normally, stools should be entirely free of blood. A positive occult blood indicates the presence of free haemoglobin found in the stool, which is released when red blood cells are broken down.
Colour
Stool colour is primarily associated with diet and medication use, though it may also be an indicator of various digestive health conditions.
Consistency
Stool consistency may vary from significantly hard to watery. This is self-reported by the patients upon submission of the stool sample.
White Blood Cells
These indicate an immune response that can be seen in infectious conditions or in inflammatory bowel disease (IBD) such as Crohn’s disease or ulcerative colitis. WBCs can also occur with bacterial and parasitic infections and mucosal irritation
Charcot-Leyden Crystals
This is a breakdown product of white blood cells (eosinophils) and is present in patients with tissue-invading parasites and allergic conditions.